Package: galah 2.1.1

Martin Westgate

galah: Biodiversity Data from the GBIF Node Network

The Global Biodiversity Information Facility ('GBIF', <https://www.gbif.org>) sources data from an international network of data providers, known as 'nodes'. Several of these nodes - the "living atlases" (<https://living-atlases.gbif.org>) - maintain their own web services using software originally developed by the Atlas of Living Australia ('ALA', <https://www.ala.org.au>). 'galah' enables the R community to directly access data and resources hosted by 'GBIF' and its partner nodes.

Authors:Martin Westgate [aut, cre], Dax Kellie [aut], Matilda Stevenson [aut], Peggy Newman [aut]

galah_2.1.1.tar.gz
galah_2.1.1.zip(r-4.5)galah_2.1.1.zip(r-4.4)galah_2.1.1.zip(r-4.3)
galah_2.1.1.tgz(r-4.5-any)galah_2.1.1.tgz(r-4.4-any)galah_2.1.1.tgz(r-4.3-any)
galah_2.1.1.tar.gz(r-4.5-noble)galah_2.1.1.tar.gz(r-4.4-noble)
galah_2.1.1.tgz(r-4.4-emscripten)galah_2.1.1.tgz(r-4.3-emscripten)
galah.pdf |galah.html
galah/json (API)
NEWS

# Install 'galah' in R:
install.packages('galah', repos = c('https://atlasoflivingaustralia.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/atlasoflivingaustralia/galah-r/issues

Pkgdown site:https://galah.ala.org.au

On CRAN:

9.08 score 43 stars 1 packages 275 scripts 858 downloads 67 exports 55 dependencies

Last updated 10 days agofrom:40130d47cd. Checks:8 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 12 2025
R-4.5-winOKFeb 12 2025
R-4.5-macOKFeb 12 2025
R-4.5-linuxOKFeb 12 2025
R-4.4-winOKFeb 12 2025
R-4.4-macOKFeb 12 2025
R-4.3-winOKFeb 12 2025
R-4.3-macOKFeb 12 2025

Exports:apply_profilearrangeatlas_citationatlas_countsatlas_mediaatlas_occurrencesatlas_speciesatlas_taxonomycollapsecollectcollect_mediacomputecountdescfiltergalah_apply_profilegalah_bboxgalah_callgalah_configgalah_filtergalah_geolocategalah_group_bygalah_identifygalah_polygongalah_radiusgalah_selectgeolocategroup_byidentifyread_ziprequest_datarequest_filesrequest_metadatasearch_allsearch_apissearch_assertionssearch_atlasessearch_collectionssearch_datasetssearch_fieldssearch_identifierssearch_licencessearch_listssearch_profilessearch_providerssearch_rankssearch_reasonssearch_taxasearch_valuesselectshow_allshow_all_apisshow_all_assertionsshow_all_atlasesshow_all_collectionsshow_all_datasetsshow_all_fieldsshow_all_licencesshow_all_listsshow_all_profilesshow_all_providersshow_all_ranksshow_all_reasonsshow_valuesslice_headst_cropunnest

Dependencies:askpassbitbit64classclassIntclicliprcpp11crayoncurlDBIdplyre1071fansigenericsgluehmshttr2jsonliteKernSmoothlifecyclelobstrmagrittrMASSopensslpillarpkgconfigpotionsprettyunitsprogressproxypurrrR6rappdirsRcppreadrrlangrrapplys2sfstringistringrsystibbletidyrtidyselecttzdbunitsutf8vctrsvroomwithrwkxml2yaml

Choosing an atlas

Rendered fromchoosing_an_atlas.Rmdusingknitr::rmarkdownon Feb 12 2025.

Last update: 2024-11-19
Started: 2023-01-13

Download data

Rendered fromdownload_data.Rmdusingknitr::rmarkdownon Feb 12 2025.

Last update: 2024-11-19
Started: 2022-01-13

Download data reproducibly

Rendered fromdownload-data-reproducibly.Rmdusingknitr::rmarkdownon Feb 12 2025.

Last update: 2025-02-07
Started: 2025-02-07

Look up information

Rendered fromlook_up_information.Rmdusingknitr::rmarkdownon Feb 12 2025.

Last update: 2024-11-19
Started: 2022-01-13

Narrow your results

Rendered fromnarrow_your_results.Rmdusingknitr::rmarkdownon Feb 12 2025.

Last update: 2024-11-19
Started: 2022-01-13

Object-Oriented Programming

Rendered fromobject_oriented_programming.Rmdusingknitr::rmarkdownon Feb 12 2025.

Last update: 2024-11-19
Started: 2023-09-14

Quick start guide

Rendered fromquick_start_guide.Rmdusingknitr::rmarkdownon Feb 12 2025.

Last update: 2024-11-19
Started: 2022-01-13

Spatial filtering

Rendered fromspatial_filtering.Rmdusingknitr::rmarkdownon Feb 12 2025.

Last update: 2024-11-19
Started: 2023-10-13

Taxonomic filtering

Rendered fromtaxonomic_filtering.Rmdusingknitr::rmarkdownon Feb 12 2025.

Last update: 2024-11-19
Started: 2023-10-13

Temporal filtering

Rendered fromtemporal_filtering.Rmdusingknitr::rmarkdownon Feb 12 2025.

Last update: 2024-11-19
Started: 2023-10-13

Readme and manuals

Help Manual

Help pageTopics
Apply a data quality profileapply_profile galah_apply_profile
Order rows using column valuesarrange.data_request arrange.metadata_request
Generate a citation for occurrence dataatlas_citation
Generate a querycollapse.data_request collapse.files_request collapse.metadata_request
Collect media filescollect_media
Retrieve a database querycollect.computed_query collect.data_request collect.files_request collect.metadata_request collect.query
Compute a querycompute.data_request compute.files_request compute.metadata_request compute.query
Count the observations in each groupcount.data_request
Keep rows that match a conditionfilter.data_request filter.files_request filter.metadata_request galah_filter
Start building a querygalah_call request_data request_files request_metadata
Get or set configuration options that control galah behaviourgalah_config
Narrow a query to within a specified areagalah_bbox galah_geolocate galah_polygon galah_radius geolocate st_crop.data_request
Group by one or more variablesgalah_group_by group_by.data_request
Narrow a query by passing taxonomic identifiersgalah_identify identify.data_request identify.metadata_request
Print galah objectsprint.computed_query print.data_request print.files_request print.galah_config print.metadata_request print.query print.query_set print_galah_objects
Read downloaded data from a zip fileread_zip
Search for record informationsearch_all search_apis search_assertions search_atlases search_collections search_datasets search_fields search_identifiers search_licences search_lists search_profiles search_providers search_ranks search_reasons search_taxa
Keep or drop columns using their namesgalah_select select.data_request
Show valid record informationshow_all show_all_apis show_all_assertions show_all_atlases show_all_collections show_all_datasets show_all_fields show_all_licences show_all_lists show_all_profiles show_all_providers show_all_ranks show_all_reasons
Show or search for values within a specified fieldsearch_values show_values
Subset rows using their positionsslice_head.data_request slice_head.metadata_request
Look up taxon informationtaxonomic_searches
Non-generic tidyverse functionsdesc tidyverse_functions unnest