Package: galah 2.1.1
Martin Westgate
galah: Biodiversity Data from the GBIF Node Network
The Global Biodiversity Information Facility ('GBIF', <https://www.gbif.org>) sources data from an international network of data providers, known as 'nodes'. Several of these nodes - the "living atlases" (<https://living-atlases.gbif.org>) - maintain their own web services using software originally developed by the Atlas of Living Australia ('ALA', <https://www.ala.org.au>). 'galah' enables the R community to directly access data and resources hosted by 'GBIF' and its partner nodes.
Authors:
galah_2.1.1.tar.gz
galah_2.1.1.zip(r-4.5)galah_2.1.1.zip(r-4.4)galah_2.1.1.zip(r-4.3)
galah_2.1.1.tgz(r-4.5-any)galah_2.1.1.tgz(r-4.4-any)galah_2.1.1.tgz(r-4.3-any)
galah_2.1.1.tar.gz(r-4.5-noble)galah_2.1.1.tar.gz(r-4.4-noble)
galah_2.1.1.tgz(r-4.4-emscripten)galah_2.1.1.tgz(r-4.3-emscripten)
galah.pdf |galah.html✨
galah/json (API)
NEWS
| # Install 'galah' in R: |
| install.packages('galah', repos = c('https://atlasoflivingaustralia.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/atlasoflivingaustralia/galah-r/issues
Pkgdown site:https://galah.ala.org.au
Last updated 13 days agofrom:40130d47cd. Checks:8 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Feb 12 2025 |
| R-4.5-win | OK | Feb 12 2025 |
| R-4.5-mac | OK | Feb 12 2025 |
| R-4.5-linux | OK | Feb 12 2025 |
| R-4.4-win | OK | Feb 12 2025 |
| R-4.4-mac | OK | Feb 12 2025 |
| R-4.3-win | OK | Feb 12 2025 |
| R-4.3-mac | OK | Feb 12 2025 |
Exports:apply_profilearrangeatlas_citationatlas_countsatlas_mediaatlas_occurrencesatlas_speciesatlas_taxonomycollapsecollectcollect_mediacomputecountdescfiltergalah_apply_profilegalah_bboxgalah_callgalah_configgalah_filtergalah_geolocategalah_group_bygalah_identifygalah_polygongalah_radiusgalah_selectgeolocategroup_byidentifyread_ziprequest_datarequest_filesrequest_metadatasearch_allsearch_apissearch_assertionssearch_atlasessearch_collectionssearch_datasetssearch_fieldssearch_identifierssearch_licencessearch_listssearch_profilessearch_providerssearch_rankssearch_reasonssearch_taxasearch_valuesselectshow_allshow_all_apisshow_all_assertionsshow_all_atlasesshow_all_collectionsshow_all_datasetsshow_all_fieldsshow_all_licencesshow_all_listsshow_all_profilesshow_all_providersshow_all_ranksshow_all_reasonsshow_valuesslice_headst_cropunnest
Dependencies:askpassbitbit64classclassIntclicliprcpp11crayoncurlDBIdplyre1071fansigenericsgluehmshttr2jsonliteKernSmoothlifecyclelobstrmagrittrMASSopensslpillarpkgconfigpotionsprettyunitsprogressproxypurrrR6rappdirsRcppreadrrlangrrapplys2sfstringistringrsystibbletidyrtidyselecttzdbunitsutf8vctrsvroomwithrwkxml2yaml
Choosing an atlas
Rendered fromchoosing_an_atlas.Rmdusingknitr::rmarkdownon Feb 12 2025.Last update: 2024-11-19
Started: 2023-01-13
Download data
Rendered fromdownload_data.Rmdusingknitr::rmarkdownon Feb 12 2025.Last update: 2024-11-19
Started: 2022-01-13
Download data reproducibly
Rendered fromdownload-data-reproducibly.Rmdusingknitr::rmarkdownon Feb 12 2025.Last update: 2025-02-07
Started: 2025-02-07
Look up information
Rendered fromlook_up_information.Rmdusingknitr::rmarkdownon Feb 12 2025.Last update: 2024-11-19
Started: 2022-01-13
Narrow your results
Rendered fromnarrow_your_results.Rmdusingknitr::rmarkdownon Feb 12 2025.Last update: 2024-11-19
Started: 2022-01-13
Object-Oriented Programming
Rendered fromobject_oriented_programming.Rmdusingknitr::rmarkdownon Feb 12 2025.Last update: 2024-11-19
Started: 2023-09-14
Quick start guide
Rendered fromquick_start_guide.Rmdusingknitr::rmarkdownon Feb 12 2025.Last update: 2024-11-19
Started: 2022-01-13
Spatial filtering
Rendered fromspatial_filtering.Rmdusingknitr::rmarkdownon Feb 12 2025.Last update: 2024-11-19
Started: 2023-10-13
Taxonomic filtering
Rendered fromtaxonomic_filtering.Rmdusingknitr::rmarkdownon Feb 12 2025.Last update: 2024-11-19
Started: 2023-10-13
Temporal filtering
Rendered fromtemporal_filtering.Rmdusingknitr::rmarkdownon Feb 12 2025.Last update: 2024-11-19
Started: 2023-10-13
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Apply a data quality profile | apply_profile galah_apply_profile |
| Order rows using column values | arrange.data_request arrange.metadata_request |
| Generate a citation for occurrence data | atlas_citation |
| Generate a query | collapse.data_request collapse.files_request collapse.metadata_request |
| Collect media files | collect_media |
| Retrieve a database query | collect.computed_query collect.data_request collect.files_request collect.metadata_request collect.query |
| Compute a query | compute.data_request compute.files_request compute.metadata_request compute.query |
| Count the observations in each group | count.data_request |
| Keep rows that match a condition | filter.data_request filter.files_request filter.metadata_request galah_filter |
| Start building a query | galah_call request_data request_files request_metadata |
| Get or set configuration options that control galah behaviour | galah_config |
| Narrow a query to within a specified area | galah_bbox galah_geolocate galah_polygon galah_radius geolocate st_crop.data_request |
| Group by one or more variables | galah_group_by group_by.data_request |
| Narrow a query by passing taxonomic identifiers | galah_identify identify.data_request identify.metadata_request |
| Print galah objects | print.computed_query print.data_request print.files_request print.galah_config print.metadata_request print.query print.query_set print_galah_objects |
| Read downloaded data from a zip file | read_zip |
| Search for record information | search_all search_apis search_assertions search_atlases search_collections search_datasets search_fields search_identifiers search_licences search_lists search_profiles search_providers search_ranks search_reasons search_taxa |
| Keep or drop columns using their names | galah_select select.data_request |
| Show valid record information | show_all show_all_apis show_all_assertions show_all_atlases show_all_collections show_all_datasets show_all_fields show_all_licences show_all_lists show_all_profiles show_all_providers show_all_ranks show_all_reasons |
| Show or search for values within a specified field | search_values show_values |
| Subset rows using their positions | slice_head.data_request slice_head.metadata_request |
| Look up taxon information | taxonomic_searches |
| Non-generic tidyverse functions | desc tidyverse_functions unnest |
